Package index • dlmoR

All functions

base_constraint(): Constraint Function for Base Fit Edge Alignment

calculate_dlmo(): Calculate Dim-Light Melatonin Onset (DLMO)

calculate_slopes(): Calculate Slopes Between Data Points

constraints(): Compute Constraint Violations for Parallelogram Fit

decimal_to_posixct(): Convert Decimal Hours to POSIXct Timestamps

define_ascending_segment(): Define the ascending segment of a melatonin profile

define_base_segment(): Define the base segment of a melatonin profile

define_intermediate_segment(): Define Intermediate Segment of Melatonin Profile

define_roi(): Define Region of Interest (ROI) for Melatonin Profile

fit(): Fit Two Splines Around a Point of Interest (POI)

fit_linear(): Perform a Weighted Linear Fit

fit_profile(): Fit a Melatonin Profile to Base or Ascending Segment

get_corners(): Compute the Four Corner Points of a Parallelogram

get_inflection(): Identify the Inflection Point in a Melatonin Profile

make_grid(): Generate a Grid of Points Within a Region of Interest

nl_constraints(): Nonlinear Constraints for Parabolic Fitting

objective(): Objective Function for Parallelogram Optimization

objective_function(): Objective Function for Line or Parabola Fitting

optimize_parallelogram(): Main Function to Optimize Parallelogram

parallelogram_fit(): Apply Parallelogram Truncation and Convert Back to Datetime

plot_fit(): Add DLMO Fit Lines to a Melatonin Profile Plot

plot_ip(): Add DLMO Inflection Point to the Plot

plot_parallelogram(): Overlay a Parallelogram on a Melatonin Profile Plot

plot_profile(): Generate a Melatonin Profile Plot

plot_raw_profile(): Plot Raw Melatonin Profile

plot_roi(): Add Region of Interest (ROI) to a Plot

plot_roi_heatmap(): Add ROI Heatmap to a Plot

poi_constraints(): Enforce Slope Constraints at the Point of Interest (POI)

posixct_to_decimal(): Convert POSIXct Timestamps to Decimal Hours

preprocess_profile(): Preprocess Profile Data

run_residual_explorer(): Launch the residual explorer Shiny app

seek_inflection(): Seek the Inflection Point in a Melatonin Profile

truncate_ascending_segment(): Truncate Ascending Segment of Melatonin Profile

truncate_base_segment(): Truncate the Base Segment of a Melatonin Profile

validate_df_structure(): Validate and Standardize Dataframe Structure for Melatonin Analysis

validate_melatonin_profile: Data Validation and Preprocessing Functions